Hi JonDoe,
Thanks for your post.
May I ask do you mean your sysvol files or just the files under dfs server?
Could you please also check if there's error in the event log? And offer more information about your issue?
If you mean the sysvol files, you could check the articles below.
Troubleshooting missing SYSVOL and NETLOGON shares on Windows domain controllers
https://support.microsoft.com/en-us/kb/257338
How to rebuild the SYSVOL tree and its content in a domain
https://support.microsoft.com/en-us/kb/315457
If it's just under dfs server, you may could also monitor the DFSR log file to find the exact replication process and find if there's some error.
Best Regards,
Mary Dong