SCCM 2012 R2

Server 2012 R2

Like the title says, with some recent 2012 R2 server deployments, they are not pulling in all the software updates into Software Center. A couple of security updates show up but there should be like 30. 

When I run Windows Update and check the internet, it shows 40+ updates needed. Most of which I have deployed to this server. When you look at the cache you can see a bunch of updates downloaded to cache (most match up with what windows update sees as needed) but they do not show up in Software Center!?

I've ran and re-ran appropriate actions, restarted the server and client, reinstalled client, killed the cache and forced re-download of updates. Nothing makes a difference. Funny thing is, I have 2 different servers with this issue and they both pull in the same two updates below. I tried installing them then seeing if the rest of the updates show up - no luck.