Windows 8.1 supports what's called pre-provisioning of BitLocker, basically the encryption process happens before the OS is deployed and encrypts as everything is laid down.
Windows 7 does not support this, but you can help it along if you enable and activate the TPM in the BIOS before you kick off MDT so that BitLocker is configured while MDT runs or if your computer has OEM tools that can enable things like that, you can script
that tool to run during MDT to automatically enable TPM.
Configure your CustomSettings.ini to include settings like:
SkipBitLocker=YES
OSDBitLockerMode=TPM
OSBBitLockerCreateRecoveryPassword=AD
OSDBitLockerWaitForEncryption=FALSE
BDEInstall=TPM
BDEInstallSuppress=NO
BDEWaitForEncryption=False
BDERecoveryKey=AD
BDEKeyLocation=\\SERVER\SHARE$\BLKeys